SWISS::GeneGroup.pm
A SWISS::GeneGroup object contain all synonyms for a given gene name. See SWISS::GNs for a description of the gene name format.
SWISS::BaseClass.pm
(also implements many methods from SWISS::ListBase.pm)
"Names"
Each list element is a SWISS::GN object, describing a primary name or synonym. Concatenation of Name and Synonyms lists.
"OLN"
Each list element is a SWISS::GN object, describing an OrderedLocusName.
"ORFNames"
Each list element is a SWISS::GN object, describing an ORFName.
Standard methods
new |
fromText
toText
Specific methods
Name
Returns the Name (primary name).
Synonyms
Returns the Synonyms.
elements
Concatenates all elements from Names, OLN and ORFNames in a single array.
List manipulation methods
Since GeneGroup was a previous implementation of SWISS::ListBase, the list manipulation methods below are provided to facilitate compatibility.
size
isEmpty
elements
filter
get (deprecated)
head (deprecated)
tail (deprecated)
item (deprecated)
push (deprecated)
pop (deprecated)
shift (deprecated)
splice (deprecated)
unshift (deprecated)
set (deprecated)
add (deprecated)